PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G176200.1
Common NameB456_003G176200, LOC105789291
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 316aa    MW: 35483.6 Da    PI: 6.33
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G176200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-18171221255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp+ +g   r +lg+f ta eAaka+++ + kl+g
  Gorai.003G176200.1 171 HYRGVRQRP-WGKFAAEIRDPTRRG--SRMWLGTFETAIEAAKAYDRTAFKLRG 221
                         8********.**********97665..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.2E-31170230IPR001471AP2/ERF domain
CDDcd000182.66E-29170229No hitNo description
SMARTSM003803.0E-35171235IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-21171230IPR016177DNA-binding domain
PfamPF008473.1E-12171221IPR001471AP2/ERF domain
PROSITE profilePS5103223.551171229IPR001471AP2/ERF domain
PRINTSPR003675.9E-10172183IPR001471AP2/ERF domain
PRINTSPR003675.9E-10195211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEASSEVISA LQYIKQYLLG EFSPVELGSV SSGNQWLPES KPRVSTPGSE SLLSSDSSLT  60
VSNFNCLDDD DDFFQFSTDF PGFQFESKPQ IIDLTTPKSL SLNAGAFEFE VKPQIAQIST  120
TKHKVSSNSS SQNRKRSLKI SLPHKMEQIQ FGKSDLAQAE PRVSNSEDKK HYRGVRQRPW  180
GKFAAEIRDP TRRGSRMWLG TFETAIEAAK AYDRTAFKLR GSKAILNFPL EAGTSDTSAD  240
DLERKRSRDD GEREERQVKA VKREKDDEVT KTRENGEVPL TPSNWKTFLD WDNDQKGFFN  300
VPLLSPLSFP QVVVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-30170230161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-29170236470ATERF1
3gcc_A1e-29170236470ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4108650.0KC410865.1 Gossypium hirsutum ethylene-responsive transcription factor (ERF9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472076.10.0PREDICTED: ethylene-responsive transcription factor 5-like
TrEMBLA0A0D2MQC40.0A0A0D2MQC4_G
STRINGPOPTR_0001s15400.12e-67(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.16e-59ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]